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3D linkage folding: ribosomes, HP protein folding NP-hardness,
flattening is strongly NP-hard, flips, flipturns, deflations, pops,
popturns. |
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This class opens with a discussion about the class as a whole, and
how the experimental split into video lectures + live classes worked out.
Second, we address a few questions concerning:
Third, we cover a new result: Flattening fixed angle chains (and min/max flat span) are strongly NP-hard [Demaine & Eisenstat 2011]. Fourth, we cover a fun series of results on polygon (closed chain) reconfiguration via flips, flipturns, deflations, pops, and popturns. [More detail can be found in 2010's Lecture 21.] |
Handwritten notes, page 1/7 •
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[PDF]
Handwritten notes, page 1/7 • [previous page] • [next page] • [PDF] |
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Slides, page 1/31 •
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Plots by Erik using matplotlib Slides, page 1/31 • [previous page] • [next page] • [PDF] |
The video above should play if your web browser supports either modern Flash or HTML5 video with H.264 or WebM codec. The handwritten notes and slides should advance automatically. If you have any trouble with playback, email Erik.